Immediate effects of microclimate modification enhance native shrub encroachment

Shrubs have become more dense and expanded beyond their range all over the world for a variety of reasons including increased temperatures, overgrazing, and alteration of historical fire regime. Native shrubs have been encroaching on Virginia barrier island grasslands for over half a century for unknown reasons. Species composition, soil nutrients, leaf area index (LAI), and ground and air temperature were recorded across the shrub to grass transition and at free-standing shrubs in a coastal grassland in order to determine the effect of shrub encroachment on plant community and microclimate. Species richness was significantly lower inside shrub thickets. Soil water content, organic matter, nitrogen (N), carbon (C), and LAI were higher in shrub thickets and free-standing shrubs compared to grasslands. Summer and fall maximum temperatures were lower and more moderate where shrubs were present. Fall and winter minimum temperatures were highest inside shrub thickets. Native shrubs impact microclimate and species composition immediately upon encroachment. These shrubs lower overall species composition, increase soil nutrients and moisture, moderate summer temperature, and increase winter temperature, which has consequences on a larger scale. As barrier islands are critical for protecting marsh and mainland habitats, understanding this mechanism for shrub expansion is important to predict future encroachment of shrubs and displacement of grassland habitat

Application of Volcano Plots in Analyses of mRNA Differential Expressions with Microarrays

Volcano plot displays unstandardized signal (e.g. log-fold-change) against noise-adjusted/standardized signal (e.g. t-statistic or -log10(p-value) from the t test). We review the basic and an interactive use of the volcano plot, and its crucial role in understanding the regularized t-statistic. The joint filtering gene selection criterion based on regularized statistics has a curved discriminant line in the volcano plot, as compared to the two perpendicular lines for the "double filtering" criterion. This review attempts to provide an unifying framework for discussions on alternative measures of differential expression, improved methods for estimating variance, and visual display of a microarray analysis result. We also discuss the possibility to apply volcano plots to other fields beyond microarray.Comment: 8 figure

Nitrogen and phosphorus loads to temperate seepage lakes associated with allochthonous dissolved organic carbon loads

Terrestrial loads of dissolved organic matter (DOM) have increased in recent years in many north temperate lakes. While much of the focus on the “browning” phenomena has been on its consequences for carbon cycling, much less is known about how it influences nutrient loading to lakes. We characterize potential loads of nitrogen and phosphorus to seepage lakes in northern Wisconsin, USA, based on a laboratory soil leaching experiment and a model that includes landscape cover and watershed area. In these seepage lakes, nutrient concentrations are positively correlated with dissolved organic carbon concentrations (nitrogen: r = 0.68, phosphorus: r = 0.54). Using long‐term records of browning, we found that dissolved organic matter‐associated nutrient loadings may have resulted in substantial increases in nitrogen and phosphorus in seepage lakes and could account for currently observed nutrient concentrations in the lake. “Silent” nutrient loadings to brown‐water lakes may lead to future water‐quality concerns. PLAIN LANGUAGE SUMMARY: The color of many temperate lakes is changing; some lakes are becoming more darkly stained brown. The tea‐colored stain is due to dissolved organic matter from the surrounding landscape. Much of the research related to the causes and consequences of increased staining, or “brownification,” relate to its connection to the carbon cycle. However, by examining long‐term lake chemical records, analyzing the properties of the organic compounds, and modeling potential flows of the compounds, we find that carbon is not the only element that is influenced by browning. Nitrogen and phosphorus, two nutrients important to growth of organisms at the base of the food web, may also be increasing in lakes due to brownification."Funding for this research was supported by the Northern Research Station and the Chequamegon-Nicolet National Forest (CNNF) of the United States Department of Agriculture (USDA) Forest Service and a National Science Foundation (NSF) grant to the University of Wisconsin-Madison to support the North Temperate Lakes Long-Term Ecological Research (NTLLTER) Site (DEB-#1440297)."https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2018GL07721

Stream biasing by different induction sequences: Evaluating stream capture as an account of the segregation-promoting effects of constant-frequency inducers

Stream segregation for a test sequence comprising high-frequency (H) and low-frequency (L) pure tones, presented in a galloping rhythm, is much greater when preceded by a constant-frequency induction sequence matching one subset than by an inducer configured like the test sequence; this difference persists for several seconds. It has been proposed that constant-frequency inducers promote stream segregation by capturing the matching subset of test-sequence tones into an on-going, pre-established stream. This explanation was evaluated using 2-s induction sequences followed by longer test sequences (12–20 s). Listeners reported the number of streams heard throughout the test sequence. Experiment 1 used LHL– sequences and one or other subset of inducer tones was attenuated (0–24 dB in 6-dB steps, and 1). Greater attenuation usually caused a progressive increase in segregation, towards that following the constant-frequency inducer. Experiment 2 used HLH– sequences and the L inducer tones were raised or lowered in frequency relative to their test-sequence counterparts (DfI¼ 0, 0.5, 1.0, or 1.5 DfT). Either change greatly increased segregation. These results are concordant with the notion of attention switching to new sounds but contradict the stream-capture hypothesis, unless a “proto-object” corresponding to the continuing subset is assumed to form during the induction sequence

Dichotic integration of acoustic-phonetic information: Competition from extraneous formants increases the effect of second-formant attenuation on intelligibility

Differences in ear of presentation and level do not prevent effective integration of concurrent speech cues such as formant frequencies. For example, presenting the higher formants of a consonant-vowel syllable in the opposite ear to the first formant protects them from upward spread of masking, allowing them to remain effective speech cues even after substantial attenuation. This study used three-formant (F1+F2+F3) analogues of natural sentences and extended the approach to include competitive conditions. Target formants were presented dichotically (F1+F3; F2), either alone or accompanied by an extraneous competitor for F2 (i.e., F1±F2C+F3; F2) that listeners must reject to optimize recognition. F2C was created by inverting the F2 frequency contour and using the F2 amplitude contour without attenuation. In experiment 1, F2C was always absent and intelligibility was unaffected until F2 attenuation exceeded 30 dB; F2 still provided useful information at 48-dB attenuation. In experiment 2, attenuating F2 by 24 dB caused considerable loss of intelligibility when F2C was present, but had no effect in its absence. Factors likely to contribute to this interaction include informational masking from F2C acting to swamp the acoustic-phonetic information carried by F2, and interaural inhibition from F2C acting to reduce the effective level of F2

Correlation between Gamma-Ray bursts and Gravitational Waves

The cosmological origin of $\gamma$-ray bursts (GRBs) is now commonly accepted and, according to several models for the central engine, GRB sources should also emit at the same time gravitational waves bursts (GWBs). We have performed two correlation searches between the data of the resonant gravitational wave detector AURIGA and GRB arrival times collected in the BATSE 4B catalog. No correlation was found and an upper limit \bbox{$h_{\text{RMS}} \leq 1.5 \times 10^{-18}$} on the averaged amplitude of gravitational waves associated with $\gamma$-ray bursts has been set for the first time.Comment: 7 pages, 3 figures, submitted to Phys. Rev.

The development of a space climatology: 1. solar-wind magnetosphere coupling as a function of timescale and the effect of data gaps

Different terrestrial space weather indicators (such as geomagnetic indices, transpolar voltage, and ring current particle content) depend on different “coupling functions” (combinations of near-Earth solar wind parameters) and previous studies also reported a dependence on the averaging timescale, {\tau}. We study the relationships of the am and SME geomagnetic indices to the power input into the magnetosphere P_{\alpha}, estimated using the optimum coupling exponent {\alpha} for a range of {\tau} between 1 min and 1 year. The effect of missing data is investigated by introducing synthetic gaps into near-continuous data and the best method for dealing with them when deriving the coupling function, is formally defined. Using P_{\alpha}, we show that gaps in data recorded before 1995 have introduced considerable errors into coupling functions. From the near-continuous solar wind data for 1996-2016, we find {\alpha} = 0.44 plus/minus 0.02 and no significant evidence that {\alpha} depends on {\tau}, yielding P_{\alpha} = B^0.88 Vsw^1.90 (mswNsw)^0.23 sin4({\theta}/2), where B is the Interplanetary Magnetic Field (IMF), Nsw the solar wind number density, msw its mean ion mass, Vsw its velocity and {\theta} is the IMF clock angle in the Geocentric Solar Magnetospheric reference frame. Values of P_{\alpha} that are accurate to within plus/minus 5% for 1996-2016 have an availability of 83.8% and the correlation between P_{\alpha} and am for these data is shown to be 0.990 (between 0.972 and 0.997 at the 2{\sigma} uncertainty level), 0.897 plus/minus 0.004, and 0.790 plus/minus 0.03, for {\tau} of 1 year, 1 day and 3 hours, respectively, and that between P_{alpha} and SME at {\tau} of 1 min. is 0.7046 plus/minus 0.0004

Effects of mountain gorilla foraging activities on the productivity of their food plant species

Mountain gorillas subsist principally on foliage from the dense herbaceous understorey that is found throughout most of their habitat in the Virunga Volcanoes region. Their foraging activities cause considerable structural damage to this vegetation. Those plant species that are quantitatively most important in the gorillas' diet respond to this damage by increasing primary productivity. At a sample of spots at which gorillas had fed, these species showed significantly higher growth rates over a 6-month interval than they did at nearby spots that had not been touched by the gorillas. Stem densities of herbaceous food species at feeding spots increased markedly both in comparison to their original values and to values for the same species at untouched spots. As a result, spots at which gorillas have fed are likely to become very attractive as future feeding spots. It is unlikely that gorillas ‘manage’ their habitat in any specific fashion, largely because they do not have exclusive use of their home ranges. Their activities appear to maintain habitat productivity over the short term, on a time scale relevant to patterns of area revisits by social groups, and may contribute to long term beneficial alterations of regularly used areas, however. Effects of the type reported here may have been an important aspect of the adaptation by gorillas to terrestrial folivory. RÉSUMEÉ Les gorilles de montagne s'alimentent principalement de feuillages dans le sous-bois herbacÉ dense prÉsent presque partout dans leur habitat de la rÉgion des volcans Virunga. Leurs activitÉs alimentaires causent des dommages structurels considÉrables À cette vÉgÉtation. Les plantes des espÈces qui sont quantitativement les plus importants dans le rÉgime du gorille rÉagissent À ces dÉgats en augmentant leur productivitÉ primaire. Aux postes Échantillons oÙ les gorilles se sont nourris, ces espÈces prÉsentent des taux de croissance significantivement supÉrieurs sur un intervalle de six mois, par rapport aux postes voisins qui n'ont pas ÉtÉ touchÉs par les gorilles. Les densitÉs de tiges des espÈces herbacÉes appÉtÉes aux postes de nourrissage augmentent nettement aussi bien en comparaison avec leurs valeurs antÉrieures qu'avec celles de ces měmes espÈces dans des stations non touchÉes. En consÉquence, les postes oÙ les gorilles se sont nourris ont plus de chance de devenir des futurs postes de nourrissage trÈs attractifs. Il est peu probable que les gorilles ‘gÈrent’ leur habitat d'une quelconque faÇon, surtout parce qu'ils n'ont pas l'utilisation exclusive de leur domaine vital. Leurs activitÉs semblent maintenir À court terme la productivitÉ de leur habitat, sur une Échelle de temps comprenant les visites successives de groupes sociaux, et peuvent contribuer À long terme À des altÉrations bÉnÉfiques pour ces zones rÉguliÉrement frÉquentÉes. Des effets du type rapportÉ ici peuvent avoir ÉtÉ un ÉlÉment important de l'adaptation des gorilles À la folivorie terrestre.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/75171/1/j.1365-2028.1987.tb01102.x.pd